alignment

package

v0.0.0-...-4aa8193 Latest Latest Go to latest Published: Nov 26, 2015 License: MIT Imports: 4 Imported by: 0

Details

Valid go.mod file
Redistributable license
Tagged version
Stable version
Learn more about best practices

Repository

github.com/6br/go_alignment

Links

Open Source Insights

Documentation ¶

Index ¶

func Benchmark(b *testing.B)
type Gotoh
- func NewGotoh(y string, x string, settings Constants) *Gotoh
- func (l *Gotoh) Length()
- func (l Gotoh) Print(i int, j int) (string, string, string)
- func (l Gotoh) Print_iter(i int, j int, arg int) (string, string, string)
- func (l Gotoh) Score() int
- func (l Gotoh) ScoreArgs(x int, y int) (int, int)
- func (l Gotoh) Strlen() (int, int)
- func (l Gotoh) Substitution(x int, y int) int
type LCS
- func NewLCS(y string, x string) *LCS
- func (l LCS) Length()
- func (l LCS) Print(i int, j int) (string, string, string)
- func (l LCS) Score() int
- func (l LCS) Strlen() (int, int)
type LGotoh
- func NewLGotoh(y string, x string, settings Constants) *LGotoh
- func (l *LGotoh) Length()
- func (l LGotoh) Print(i int, j int) (string, string, string)
- func (l LGotoh) Print_iter(i int, j int, arg int) (string, string, string)
- func (l LGotoh) Score() int
- func (l LGotoh) ScoreArgs(x int, y int) (int, int)
- func (l LGotoh) Strlen() (int, int)
- func (l LGotoh) Substitution(x int, y int) int
type MEA
- func NewMEA(y string, x string, matrix Constants) *MEA
- func (l MEA) Length()
- func (l MEA) Print(i int, j int) (string, string, string)
- func (l MEA) Score() int
- func (l MEA) Strlen() (int, int)
type NW
- func NewNW(y string, x string) *NW
- func (l NW) Length()
- func (l NW) Print(i int, j int) (string, string, string)
- func (l NW) Score() int
- func (l NW) Strlen() (int, int)
type Rgotoh
- func NewRGotoh(y string, x string, settings Constants) *Rgotoh
- func (l *Rgotoh) Length()
- func (l Rgotoh) LinearBinaryAlign(i1 int, i2 int, j1 int, j2 int, score int) (p string, q string, r string)
- func (l Rgotoh) LinearSpace(i0 int, j0 int, i int, j int, score int) (p string, q string, r string)
- func (l Rgotoh) Print(i int, j int) (string, string, string)
- func (l *Rgotoh) RegionAlign(i1 int, i2 int, j1 int, j2 int, order bool) (int, int, int)
- func (l Rgotoh) Score() int
- func (l Rgotoh) ScoreArgs(x int) (e int, k int)
- func (l Rgotoh) Strlen() (int, int)
- func (l Rgotoh) Substitution(x int, y int) int
type SW
- func NewSW(y string, x string) *SW
- func (l *SW) Length()
- func (l SW) Print(i int, j int) (string, string, string)
- func (l SW) Score() int
- func (l SW) Strlen() (int, int)

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func Benchmark ¶

func Benchmark(b *testing.B)

Types ¶

type Gotoh ¶

type Gotoh struct {
	Constants
	// contains filtered or unexported fields
}

func NewGotoh ¶

func NewGotoh(y string, x string, settings Constants) *Gotoh

func (*Gotoh) Length ¶

func (l *Gotoh) Length()

func (Gotoh) Print ¶

func (l Gotoh) Print(i int, j int) (string, string, string)

func (Gotoh) Print_iter ¶

func (l Gotoh) Print_iter(i int, j int, arg int) (string, string, string)

func (Gotoh) Score ¶

func (l Gotoh) Score() int

func (Gotoh) ScoreArgs ¶

func (l Gotoh) ScoreArgs(x int, y int) (int, int)

func (Gotoh) Strlen ¶

func (l Gotoh) Strlen() (int, int)

func (Gotoh) Substitution ¶

func (l Gotoh) Substitution(x int, y int) int

type LCS ¶

type LCS struct {
	// contains filtered or unexported fields
}

func NewLCS ¶

func NewLCS(y string, x string) *LCS

func (LCS) Length ¶

func (l LCS) Length()

func (LCS) Print ¶

func (l LCS) Print(i int, j int) (string, string, string)

func (LCS) Score ¶

func (l LCS) Score() int

func (LCS) Strlen ¶

func (l LCS) Strlen() (int, int)

type LGotoh ¶

type LGotoh struct {
	Constants
	// contains filtered or unexported fields
}

func NewLGotoh ¶

func NewLGotoh(y string, x string, settings Constants) *LGotoh

func (*LGotoh) Length ¶

func (l *LGotoh) Length()

func (LGotoh) Print ¶

func (l LGotoh) Print(i int, j int) (string, string, string)

func (LGotoh) Print_iter ¶

func (l LGotoh) Print_iter(i int, j int, arg int) (string, string, string)

func (LGotoh) Score ¶

func (l LGotoh) Score() int

func (LGotoh) ScoreArgs ¶

func (l LGotoh) ScoreArgs(x int, y int) (int, int)

func (LGotoh) Strlen ¶

func (l LGotoh) Strlen() (int, int)

func (LGotoh) Substitution ¶

func (l LGotoh) Substitution(x int, y int) int

type MEA ¶

type MEA struct {
	Constants
	// contains filtered or unexported fields
}

func NewMEA ¶

func NewMEA(y string, x string, matrix Constants) *MEA

func (MEA) Length ¶

func (l MEA) Length()

func (MEA) Print ¶

func (l MEA) Print(i int, j int) (string, string, string)

func (MEA) Score ¶

func (l MEA) Score() int

func (MEA) Strlen ¶

func (l MEA) Strlen() (int, int)

type NW ¶

type NW struct {
	// contains filtered or unexported fields
}

func NewNW ¶

func NewNW(y string, x string) *NW

func (NW) Length ¶

func (l NW) Length()

func (NW) Print ¶

func (l NW) Print(i int, j int) (string, string, string)

func (NW) Score ¶

func (l NW) Score() int

func (NW) Strlen ¶

func (l NW) Strlen() (int, int)

type Rgotoh ¶

type Rgotoh struct {
	Constants
	// contains filtered or unexported fields
}

func NewRGotoh ¶

func NewRGotoh(y string, x string, settings Constants) *Rgotoh

func (*Rgotoh) Length ¶

func (l *Rgotoh) Length()

func (Rgotoh) LinearBinaryAlign ¶

func (l Rgotoh) LinearBinaryAlign(i1 int, i2 int, j1 int, j2 int, score int) (p string, q string, r string)

func (Rgotoh) LinearSpace ¶

func (l Rgotoh) LinearSpace(i0 int, j0 int, i int, j int, score int) (p string, q string, r string)

func (Rgotoh) Print ¶

func (l Rgotoh) Print(i int, j int) (string, string, string)

func (*Rgotoh) RegionAlign ¶

func (l *Rgotoh) RegionAlign(i1 int, i2 int, j1 int, j2 int, order bool) (int, int, int)

func (Rgotoh) Score ¶

func (l Rgotoh) Score() int

func (Rgotoh) ScoreArgs ¶

func (l Rgotoh) ScoreArgs(x int) (e int, k int)

func (Rgotoh) Strlen ¶

func (l Rgotoh) Strlen() (int, int)

func (Rgotoh) Substitution ¶

func (l Rgotoh) Substitution(x int, y int) int

type SW ¶

type SW struct {
	// contains filtered or unexported fields
}

func NewSW ¶

func NewSW(y string, x string) *SW

func (*SW) Length ¶

func (l *SW) Length()

func (SW) Print ¶

func (l SW) Print(i int, j int) (string, string, string)

func (SW) Score ¶

func (l SW) Score() int

func (SW) Strlen ¶

func (l SW) Strlen() (int, int)

Source Files ¶

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Directories ¶

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